Fredrik,
Pulling the wings and a seven hour trip sounds like a pain.
Have you done all the basics to check lane B? Lane B uses coils 2 & 4, and all the top spark plugs. Have you checked coil resistance, spark plug wire resistances, spark plug boot resistances and the spark plugs for Lane B? You said you changed one coil, I assume that was 2 or 4. You could swap the other Lane B coil with one of the Lane A coils (1 or 3) and see if the problem changes lanes.
I remember you said after changing a coil the problem seemed resolved at first. So it seems like you might have touched something that made a temporary difference. Were the connectors tight on the primary side of the coil? There were some problems with the earlier primary side terminals getting loose, and Rotax’s changed connector types a couple years ago. It’s perplexing that your problem is not causing a lane fault.