I think it must be your specific installation.
we have about 7 912IS engines in my local area and so far no gearbox issues. I would also look at the Prop, inertia, balancing, and any places that are non standard that could setup a harmonic. That is things like rubber isolators of incorrect shore hardness etc.
Check that you have a battery as large as specified in the 912 IS installation manual, it is bigger than a ULS one low voltage on starting is hard on gearboxes and sprag clutches.
Good luck