Hi Leif,
Congratulations for solving (finding?) the problem.
One thing more: Check the type of the spark plugs.Vibrations causes from a running engine. Vibrations can hurt all parts of the engine, including the gear box. Renovate the gear box is surely good but is the gear box really the origin of your problem? If problems occur at special times or events and then they dissapear sometimes, in my oppinion this could not be causes by a static part. For me a gear box is mostly a static part even if there are some gear wheels running. Defects at the gear wheels are mostly shown by a noise first. My experiance is that the combustions by the running engine is the beginning of vibrations and this is not to avoid. But abnormal vibrations can caused by abnormal combustions.
You checked some parts of the line like carburator (including the carburator floats?), ignition and so on, did you checked the spark plugs?. Are the NGK installed? - an easy question - easy to check An another easy thing. My experience with the carburator vent hose shows that this can be a big influence at the carburator. Are the carburator vent hoses fixed in a right position maybe like at the beginning? Much more easier to check- So from some contributers mentioned before start with the first and easiest to find the origin of your problem.
Greetings